PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182087.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 498aa MW: 53547 Da PI: 8.5619

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182087.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.1	2.8e-15	152	211	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_019182087.1 152 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 211 57*****************666664477446***********************98 PP
2	AP2	47.3	5.1e-15	254	305	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_019182087.1 254 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 305 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MDNMDSSSSS AQNWLAFSLS NPQTQPTPPN PSPLSFFHSF NSNSTSAVVR GEENGGGVLA 60 GGGPKLEDFL GGSVGSSAGG VCLIAGESAA APAAVSEPEL YDSELKSIAA SFLRGFTADQ 120 NDTQKQQQQA VAAPPPDPPA KKAAETFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ 180 SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTTTTNFPV SNYKKELEEM KHMTRQEFVA 240 SLRRRSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA 300 IKFRGLNAVT NFDISRYDVK TIGNSNLPIG GVSNKPKTSS ESDDRDQTSA SSSVSFTPLP 360 PPLPPPPAPA FALPIKNDSN DFWSMLGCHN NNNTKNPCPS PSVNFPGPPS STSIQAQGTY 420 IQAQSTPLFG MEIPSSSHIN QANNHNFTAM NFHQQHSNTG GSLSSSAAPT AGGGWGNIPS 480 SLKNDLSAAF QTPIFSME

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MDNMDSSSSS AQNWLAFSLS NPQTQPTPPN PSPLSFFHSF NSNSTSAVVR GEENGGGVLA  60
GGGPKLEDFL GGSVGSSAGG VCLIAGESAA APAAVSEPEL YDSELKSIAA SFLRGFTADQ  120
NDTQKQQQQA VAAPPPDPPA KKAAETFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ  180
SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTTTTNFPV SNYKKELEEM KHMTRQEFVA  240
SLRRRSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA  300
IKFRGLNAVT NFDISRYDVK TIGNSNLPIG GVSNKPKTSS ESDDRDQTSA SSSVSFTPLP  360
PPLPPPPAPA FALPIKNDSN DFWSMLGCHN NNNTKNPCPS PSVNFPGPPS STSIQAQGTY  420
IQAQSTPLFG MEIPSSSHIN QANNHNFTAM NFHQQHSNTG GSLSSSAAPT AGGGWGNIPS  480
SLKNDLSAAF QTPIFSME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-120	AP2 family protein