PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182105.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 666aa MW: 75002.3 Da PI: 6.9915

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.7	1.1e-19	73	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA+ vGF+vr s+ +++ r+g +k +vCs+eg+++ + + + +r+r+++r+gC+a+l++k+ +dg+++v+ +el H XP_019182105.1 73 DFYRQYASLVGFDVRCSSLRRN-RQGVAVKDLLVCSREGFKQAVQGSvvvdaaldqaPVAPKRRRVSNRVGCRARLVLKMGDDGVFVVHFIELRH 166 6***************9999.7888999**********999***999889999**************************** PP FAR1 86 nHela 90 nH l+ XP_019182105.1 167 NHCLC 171 998 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MDSPDCLLIY GFRWWDDNIA CVFLDLVRSR SESQHGCVMD VSPDGTKFWT PSCDATVRPF 60 QGQTFPSLAH GIDFYRQYAS LVGFDVRCSS LRRNRQGVAV KDLLVCSREG FKQAVQGSVV 120 VDAALDQAPV APKRRRVSNR VGCRARLVLK MGDDGVFVVH FIELRHNHCL CSDVAKPFLR 180 GNRSMDVQHQ IFVLKCARAN VGPNRSFRLA REFAGSYSNV GATCVDFKNL KRDLMAFIGT 240 SDAHIVVKKY AKKVDDCPDY VFRYDVDSQD QLCRAFWTDP IAKENFSAFG EVVSFDATYG 300 TNRYGMVLVP FTGVDNHKRG VTFAMGLISR EDVDSYVWLL QQFKSAMGCV PSCTITDQDP 360 SMRVAVPQVF DTTRHRFCMW HIMSKVGEKV GNVLSKDEEF RRALNDVVWC EMSSVEEFER 420 GWQDVMKKYS LGDHRWFRLM YDLRSYWIPA YFNDIFMGGL LRTTSRFEAA NSVFGSCTNQ 480 HASLSELFNN FEGAIDAQRL AQAKLNAECE GHFPLCQTPM LIKKHAAAVY TINVFYDVQA 540 EVIAGSFSCR AVRSNVEGLV TRYEVEDDDG PVLGVQRGGD SEVDVAIGEA WAEFFSCVTM 600 ASRSVEHVTK LNAALKDFNA FLLAENGPTV RASSSKKQLF ESFCGASPDG QIGWSWYSFI 660 PFSFIQ

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MDSPDCLLIY GFRWWDDNIA CVFLDLVRSR SESQHGCVMD VSPDGTKFWT PSCDATVRPF  60
QGQTFPSLAH GIDFYRQYAS LVGFDVRCSS LRRNRQGVAV KDLLVCSREG FKQAVQGSVV  120
VDAALDQAPV APKRRRVSNR VGCRARLVLK MGDDGVFVVH FIELRHNHCL CSDVAKPFLR  180
GNRSMDVQHQ IFVLKCARAN VGPNRSFRLA REFAGSYSNV GATCVDFKNL KRDLMAFIGT  240
SDAHIVVKKY AKKVDDCPDY VFRYDVDSQD QLCRAFWTDP IAKENFSAFG EVVSFDATYG  300
TNRYGMVLVP FTGVDNHKRG VTFAMGLISR EDVDSYVWLL QQFKSAMGCV PSCTITDQDP  360
SMRVAVPQVF DTTRHRFCMW HIMSKVGEKV GNVLSKDEEF RRALNDVVWC EMSSVEEFER  420
GWQDVMKKYS LGDHRWFRLM YDLRSYWIPA YFNDIFMGGL LRTTSRFEAA NSVFGSCTNQ  480
HASLSELFNN FEGAIDAQRL AQAKLNAECE GHFPLCQTPM LIKKHAAAVY TINVFYDVQA  540
EVIAGSFSCR AVRSNVEGLV TRYEVEDDDG PVLGVQRGGD SEVDVAIGEA WAEFFSCVTM  600
ASRSVEHVTK LNAALKDFNA FLLAENGPTV RASSSKKQLF ESFCGASPDG QIGWSWYSFI  660
PFSFIQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	137	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-75	FAR1 family protein