PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182147.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21740.9 Da    PI: 10.1765
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.7e-261765149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k i+n+  rqvtfskRr gi+KKA ELSvLC+a+vav++fs++gk++++
  XP_019182147.1 17 KMIDNHASRQVTFSKRRSGIFKKAGELSVLCGAQVAVVVFSPKGKVFTF 65
                    679*********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MFIRKKETRG RQKIAIKMID NHASRQVTFS KRRSGIFKKA GELSVLCGAQ VAVVVFSPKG  60
KVFTFGHPSF DDVVRRFQTA TEALRVPQPS HPAVQEINVL EEERKRLLEN KDGSKGNVAA  120
AQESGNVLWW NRDIDEMGGE ELVAYTAAVE ALKANAILKA RDRVIAERLE NIEVGKVGYS  180
DLLLPRSSDF SLANF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-29M-type_MADS family protein