PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182421.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25741.6 Da    PI: 5.9853
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1962115457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     ++++++eq++ Le+ F  +r++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  XP_019182421.1  62 KRKLSEEQVNLLEQSFGDERKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 115
                     45899***********************************************95 PP
2HD-ZIP_I/II119.81.4e-3861151292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kr+ls+eqv+lLE+sF  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + en+rLe++v +L+e+l 
  XP_019182421.1  61 RKRKLSEEQVNLLEQSFGDERKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKAEHDSTVLENCRLESQVLKLKEQLC 151
                     8**************************************************************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAGCGGINNN QVDDQMALIS HFYPDIYTQL LPDQGEATEA KPRRRRKKNK AGGDGGMTGI  60
RKRKLSEEQV NLLEQSFGDE RKLESERKDR LASELGLDPR QVAVWFQNRR ARWKNKKLEE  120
EYSKLKAEHD STVLENCRLE SQVLKLKEQL CDAENRIQSL LERRHHGGGG GGGGGDGVSS  180
NSPSTSSFPT EAPTFFGEFG MDGLDDEFYV DENHYGHVVD QWIKFYGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14364RRRRKKNKAGGDGGMTGIRKRK
24465RRRRKKNKAGGDGGMTGIRKRK
34566RRRRKKNKAGGDGGMTGIRKRK
44667RRRRKKNKAGGDGGMTGIRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-60HD-ZIP family protein