PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182446.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 254aa    MW: 27488.8 Da    PI: 5.3328
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00095107129123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ F ++  L  H++ H
  XP_019182446.1 107 FTCNFCKRKFYSSQALGGHQNAH 129
                     89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MMKGSDFDLE VEASSENDYD IISQVGSNVS IQETLTDSSK MSGLGALQLS TSEPVSLDLS  60
LGFKPGCLDE MAGGGQGGSA AFSVSSTSES SNELTTQTTG SANPRVFTCN FCKRKFYSSQ  120
ALGGHQNAHK RERTLAKRAM RMAIFSEKYA SFASLPLHSY TTVAATAAAA ARSLEIKTHS  180
SLHGFAPTMR PLDFRTYSKF EPTLLSQPIY VEDDEPKMLW PGSFRPEAAS TMNHVEMAQI  240
LETDNSAPDL TLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-37C2H2 family protein