PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182605.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 261aa MW: 30069.3 Da PI: 8.9226

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g W++++ + g++R++k+c++rw++yl XP_019182605.1 19 KGAWTEEEDNLLRKCIQKYGEGKWHLVPLRAGLNRCRKSCRLRWLNYL 66 79********************************************97 PP
2	Myb_DNA-binding	45	2.4e-14	72	116	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++ +E +l+ +++++lG++ W++Ia +++ gRt++++k++w+++ XP_019182605.1 72 RGDFSVDEVDLIMRLHRLLGNR-WSLIAGRIP-GRTANDVKNYWNTH 116 799*****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MVNSSSAWPP PSSSRLMRKG AWTEEEDNLL RKCIQKYGEG KWHLVPLRAG LNRCRKSCRL 60 RWLNYLRPDI KRGDFSVDEV DLIMRLHRLL GNRWSLIAGR IPGRTANDVK NYWNTHIQKK 120 VFAMARMQDN WKGKAPEIRE NTVVRPRPRR FLNTSLSPTS KTGKATAVTY DAQIQGHTLP 180 QPPEAIITTS DLVMENVQLN NTIATLPSEL ETTTSDDRVR WWEDLLFDKE FNDDEGNACM 240 HEGQVGWTNL PIDMDLLELL S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	5e-61	MYB family protein