PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182607.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 264aa MW: 29936.1 Da PI: 6.3678

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182607.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll ++++++G g W++++ + g++R++k+c++rw++yl XP_019182607.1 15 KGAWTEQEDNLLRKCIHKYGEGKWHLVPVRAGLNRCRKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	37.9	4.2e-12	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg + +E +l+ +++k+lG++ W++Ia +++ gRt++++k+ w++ XP_019182607.1 68 RGDFNLDEIDLIMRLHKLLGNR-WSLIAGRIP-GRTANDVKNLWNT 111 788999**************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MADSSSEPPS GVMKKGAWTE QEDNLLRKCI HKYGEGKWHL VPVRAGLNRC RKSCRLRWLN 60 YLRPDIKRGD FNLDEIDLIM RLHKLLGNRW SLIAGRIPGR TANDVKNLWN TRLQKKTIAT 120 PSSGQEKWKD KAPKTTEKTV VIRPQPRRFV VTSSSRTLPM TGKTTIVTSE EVVQLQGHNM 180 PPPPPPPPEA AESTSVPRLM ENVDPNNSII DPPEEAETSD NLAPWLDDFL LDMEFDGDGM 240 TCMQEGQIEW CDFHIDSDLL DLLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	3e-59	MYB family protein