PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182609.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 255aa    MW: 28965.6 Da    PI: 7.1988
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182609.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd ll ++++++G g W++I+ + g++R++k+c++rw++yl
   XP_019182609.1 16 KGAWSEEEDHLLRECIQKYGEGKWHLIPLRAGLNRCRKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding48.22.5e-1569114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_019182609.1  69 RGDFSPDEVDLILRLHKLLGNR-WTLIAGRIP-GRTANDVKNFWNTHL 114
                      899*******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MVISSVLSGS SSRVRKGAWS EEEDHLLREC IQKYGEGKWH LIPLRAGLNR CRKSCRLRWL  60
NYLHPDIKRG DFSPDEVDLI LRLHKLLGNR WTLIAGRIPG RTANDVKNFW NTHLQKKVSA  120
MAMASPRQDN WKGKAPEITE NTVVRPRPRR FLNAASSSPT TLFTGNATTV AYDGQLQGHN  180
ITTQPETTSD LLMENVQQNN STTTLPSVLL ETTPHDKVDN VTWWEDILSD KELSDEGQFS  240
WSEFPTDIDL SELLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.18e-61MYB family protein