PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182681.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 283aa MW: 32146 Da PI: 5.2241

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd +l++ + + G +W+++++ g+ R++k+c++rw +yl XP_019182681.1 14 KGPWTTEEDNKLINFILKNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.9	1.7e-16	71	111	5	47
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++ +d+++qlG++ W++Ia++++ gRt++++k++w+++ XP_019182681.1 71 SDHEEKMVIDLHAQLGNR-WSKIASYLP-GRTDNEIKNHWNTH 111 789*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MGRQPCCDKV GLKKGPWTTE EDNKLINFIL KNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SDHEEKMVID LHAQLGNRWS KIASYLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPVTHRPLC SATIDDDNKE TAKQRESSVP ETMDERCREV VVETPLMDQS TITDAFEEDN 180 KNMETSPTPL DPPQVNNGFF SSPDEILATS LSSSSSSPSN SHGGFVSSVD NNNNNNNNVG 240 SLLEDLDFLP GFDWHHDYIN DVGLWVEDDD YFKELCFVDM FSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	4e-92	MYB family protein