PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182743.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 487aa MW: 53375.3 Da PI: 6.2114

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.6e-16	54	98	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W++I +++g ++t+ q++s+ qk+ XP_019182743.1 54 RERWTEEEHNKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 98 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MVSTGMTVQD QNGGTSIPAS TDMGVSAARS IQHLTPADEH APKARKPYTI TKQRERWTEE 60 EHNKFLEALK LYGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESNGTD VNSVKPIEIP 120 PPRPKRKPMH PYPRKLVIAG GAPAQEKLTS SVPSNLCPVE KENQENQSPT SVLSALGSEG 180 EGTTDSTLNG SPPPVSSALG DSSSGFLPSE QCNLLQEENR SSLPVQPSTN PGPDEQPFAR 240 LELFPQENGF VNDCSTEASS TYSLKLFGKT VLVTDSHRPS SPTSGTSKTL PTEANDEVAT 300 QSLPWTFAPM KILFGSPECT STSLYYPPTQ IEYSNTVESV LAPSLPWGLP YATASFPRVQ 360 VHDPIPVKAR PVFDPKETED NENRKEASSA ASNSGSVNIL EKHIGRNSET ETETETGESE 420 EQQSSEKIGS EVSAFRPTET TNFKLRTSSS KRMKGFLPYK RCLAERATHS STITGEEREE 480 QRTRLCL

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MVSTGMTVQD QNGGTSIPAS TDMGVSAARS IQHLTPADEH APKARKPYTI TKQRERWTEE  60
EHNKFLEALK LYGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESNGTD VNSVKPIEIP  120
PPRPKRKPMH PYPRKLVIAG GAPAQEKLTS SVPSNLCPVE KENQENQSPT SVLSALGSEG  180
EGTTDSTLNG SPPPVSSALG DSSSGFLPSE QCNLLQEENR SSLPVQPSTN PGPDEQPFAR  240
LELFPQENGF VNDCSTEASS TYSLKLFGKT VLVTDSHRPS SPTSGTSKTL PTEANDEVAT  300
QSLPWTFAPM KILFGSPECT STSLYYPPTQ IEYSNTVESV LAPSLPWGLP YATASFPRVQ  360
VHDPIPVKAR PVFDPKETED NENRKEASSA ASNSGSVNIL EKHIGRNSET ETETETGESE  420
EQQSSEKIGS EVSAFRPTET TNFKLRTSSS KRMKGFLPYK RCLAERATHS STITGEEREE  480
QRTRLCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-50	MYB_related family protein