PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182890.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 561aa MW: 59735 Da PI: 7.3908

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.2	8.2e-25	214	258	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_019182890.1 214 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 258 79****************************************985 PP
2	QLQ	55.7	1.5e-19	145	180	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 ++FT++Q+++L++Q+l+yK+L+ n+P+P+ Ll+ ++ XP_019182890.1 145 GPFTPSQWMELEHQALIYKHLVTNVPIPSSLLVSLK 180 59******************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MDFGLVGMEG MVGGGDPSGG GGGDHGSGKI KQERSGLGEE TWRLSKAPRT CSSEEDLNGV 60 NPTSLLLRSG DNNGRGHTTM LSFSSSSKSE EIPFLSVNGE DSSASISIPF FQSQPKQGLP 120 SGNVSVYAPG GVNEATRGGF SLFRGPFTPS QWMELEHQAL IYKHLVTNVP IPSSLLVSLK 180 KSLSPYTFSG LSSRPYASNW GWGPFHLGFA GNTDPEPGRC RRTDGKKWRC SRDAVPDQKY 240 CERHINRGRH RSRKPVEGQT GRAASGTAAS KAVPVVASSS SSAPVIPSGG GASNSFSAVQ 300 HQFKSMQQCP ANPSTDHLTS NRTQGLSVIS PSMNLKSKDS AISIQKQQNP LEESSARSEF 360 GFLSSDSLLN LSQKSHVNSK NSGTLDFNCH VTNEQHPVHH FTDIWTKEQS GCDSVSWPEL 420 KPDWTQLSMS SIPMTASNFS SSSSSPRQEN TSNWLPVSWG NSMGGPLGEA LNSTSGGSAG 480 SGKNSSNLNL MTEAWDSNPH LGSPPPADLQ KSDLCLTLKQ QFGGKQSQDD KKTTAALEDG 540 MGDEVIGSNL VSSVYSINVC L

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MDFGLVGMEG MVGGGDPSGG GGGDHGSGKI KQERSGLGEE TWRLSKAPRT CSSEEDLNGV  60
NPTSLLLRSG DNNGRGHTTM LSFSSSSKSE EIPFLSVNGE DSSASISIPF FQSQPKQGLP  120
SGNVSVYAPG GVNEATRGGF SLFRGPFTPS QWMELEHQAL IYKHLVTNVP IPSSLLVSLK  180
KSLSPYTFSG LSSRPYASNW GWGPFHLGFA GNTDPEPGRC RRTDGKKWRC SRDAVPDQKY  240
CERHINRGRH RSRKPVEGQT GRAASGTAAS KAVPVVASSS SSAPVIPSGG GASNSFSAVQ  300
HQFKSMQQCP ANPSTDHLTS NRTQGLSVIS PSMNLKSKDS AISIQKQQNP LEESSARSEF  360
GFLSSDSLLN LSQKSHVNSK NSGTLDFNCH VTNEQHPVHH FTDIWTKEQS GCDSVSWPEL  420
KPDWTQLSMS SIPMTASNFS SSSSSPRQEN TSNWLPVSWG NSMGGPLGEA LNSTSGGSAG  480
SGKNSSNLNL MTEAWDSNPH LGSPPPADLQ KSDLCLTLKQ QFGGKQSQDD KKTTAALEDG  540
MGDEVIGSNL VSSVYSINVC L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	4e-69	GRF family protein