PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182979.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 515aa MW: 55578.2 Da PI: 6.8037

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.6	1.7e-14	240	299	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse..ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+ g ++ ++++lg ++ +++Aa+a++ a++k++g XP_019182979.1 240 SIYRGVTRHRWTGRYEAHLWDNSSrrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 299 57*****************777554488446******99***********98 PP
2	AP2	49.8	8.5e-16	342	393	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_019182979.1 342 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDVAAIKFRG 393 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MAPANNWLSF SLSSMGMLSS SSSSSSSQLH HEPTAVKINA PFAASDSPHY YFADHIYGGG 60 NDWTNGKGQM AGGLSLNGGG DSSVFHGFME EAQIHHQPPP PQQQKQLEDF LGGDSAAALV 120 RYSDSQTETQ DSSLTHISTS AAAAYFNSRQ DLQSIPGIQA FSTNSGSDVD DSASVPRTQA 180 IATAEFTGHS IDSVNALPYS QRPTGALSLA VNPQTAETAI VPVDSDTSKK IPDTFGQRTS 240 IYRGVTRHRW TGRYEAHLWD NSSRREGQAR KGRQVYLGGY DKEDKAARAY DLAALKYWGA 300 TATTNFPISN YTNELEDMKN MTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI 360 GRVAGNKDLY LGTFATEEEA AEAYDVAAIK FRGMSAVTNF EMSRYDVDTI LKSALPIGGA 420 AKRLKLSLEP EQHSPALSGG SNSSSSINFG AIPPVSAIPC GVSFDSSAAA LYHHHPTLFH 480 HLHSGGNADL SADIPAALPF QASPAEFFIW PHPSY

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MAPANNWLSF SLSSMGMLSS SSSSSSSQLH HEPTAVKINA PFAASDSPHY YFADHIYGGG  60
NDWTNGKGQM AGGLSLNGGG DSSVFHGFME EAQIHHQPPP PQQQKQLEDF LGGDSAAALV  120
RYSDSQTETQ DSSLTHISTS AAAAYFNSRQ DLQSIPGIQA FSTNSGSDVD DSASVPRTQA  180
IATAEFTGHS IDSVNALPYS QRPTGALSLA VNPQTAETAI VPVDSDTSKK IPDTFGQRTS  240
IYRGVTRHRW TGRYEAHLWD NSSRREGQAR KGRQVYLGGY DKEDKAARAY DLAALKYWGA  300
TATTNFPISN YTNELEDMKN MTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI  360
GRVAGNKDLY LGTFATEEEA AEAYDVAAIK FRGMSAVTNF EMSRYDVDTI LKSALPIGGA  420
AKRLKLSLEP EQHSPALSGG SNSSSSINFG AIPPVSAIPC GVSFDSSAAA LYHHHPTLFH  480
HLHSGGNADL SADIPAALPF QASPAEFFIW PHPSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.1	1e-148	AP2 family protein