PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019182987.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 304aa    MW: 33584.7 Da    PI: 4.3921
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019182987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.3e-194495556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++  +q+++Le++F +++++  e++ +LA+++gL+ rqV +WFqNrRa++k
  XP_019182987.1 44 RRLGVHQVKALEKYFDMENKLEPERKVKLAQEIGLQPRQVAIWFQNRRARWK 95
                    467789*********************************************9 PP
2HD-ZIP_I/II126.21.4e-4041133193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl  +qvk+LE+ F++e+kLeperKv+la+e+glqprqva+WFqnrRAR+ktkqlE+dy +Lk++yd+lk++ e+L++++++L e+++e
  XP_019182987.1  41 EKKRRLGVHQVKALEKYFDMENKLEPERKVKLAQEIGLQPRQVAIWFQNRRARWKTKQLERDYGVLKANYDSLKRSYETLQHDNQDLLEQIRE 133
                     69**************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MKRSSLGGSD SLDVYGREFR SMMEGVDEEE GGGGGGGGVG EKKRRLGVHQ VKALEKYFDM  60
ENKLEPERKV KLAQEIGLQP RQVAIWFQNR RARWKTKQLE RDYGVLKANY DSLKRSYETL  120
QHDNQDLLEQ IRELKGKMNG EDDGERKVTV TVKEEAVESF SGGGDKSKST AAVSLDIETE  180
LNFGDNHFHG GGGGGNASIF AEFKDWSSDS DSASAILNDD NSPNAAAMSS SGAAFLTASD  240
NPAQFSEIPK NILGDSYDDS QFVKIEEHNF FAAGEEPCTI LLSEEQAPTF PWCSPDDWNW  300
EDES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14271KKRRLGVHQVKALEKYFDMENKLEPERKVK
29098RRARWKTKQ
3111116DSLKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.29e-51HD-ZIP family protein