PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019183010.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 491aa    MW: 54541.9 Da    PI: 4.8831
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019183010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.31.5e-901384912374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++ L+++Ae+++s+  +laq +L +l++  +s +g+p++R+a+yf+eAL++ l++      ++ p+s++   +++++++a+k+fs++sPi+ fs 
  XP_019183010.1 138 IDELIQFAECFDSNAVQLAQVILPQLNQKlSSAAGNPLRRAAFYFKEALQSLLTG------STRPASSS--FEVIQTIKAYKIFSNISPIPMFSS 224
                     578*************************9799999********************......33333333..35999******************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqa+leav+g+  vH+iDfdi+ G +W++++++La+++     +pp lR+T+++++e   + e + ++e+La+fA+el++ ++ ++++ +++
  XP_019183010.1 225 FTANQAMLEAVDGAMLVHVIDFDIGFGSHWASFMKELADKAesthTKPPILRVTALVQEE--YAVESRLIRENLAQFARELNIGLDVDFVLIRTF 317
                     ***************************************99666667***********66..99999**************************** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpres 279
                     e l+++++++  gE+++V l+ +++r +           ++   ++++sP+vvv+v++e     + +sF + ++e le+ys l++slea      
  XP_019183010.1 318 ELLSFKAIKFIDGEKIVVLLSPAIFRRV--------GSGQFAADLRRVSPHVVVHVDSEGVVgpGPSSFRQTVIEGLEFYSGLLESLEAA-NVGG 403
                     ***************************9........23568889***************66645889********************776.4577 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ +k+E+++l ++iv+ v ++g +        ++W+e++ +aGF+pv ls++a  qa+lll kv+  g++v +++++++l+W+dr+Lv++SaWr
  XP_019183010.1 404 DWIKKIENFVLFPKIVETVGAAGGR-------GMTWKEAFVAAGFRPVGLSQFADFQANLLLGKVQIGGFHVAKRHAEMLLCWHDRALVATSAWR 491
                     99********************998.......789***********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    
MKVPVASNEN WNSAAGNGWY EPKSVLELRR SPSPVLDQKA APAGNFDVSD DPLELADNLL  60
TNFEDWDSFM KELGLQDDRN IKPDHNLLFT PSSESQTHQF EFTHSLPEFV PSSDFNFSQF  120
QGNINSFDEN WSFGFDYIDE LIQFAECFDS NAVQLAQVIL PQLNQKLSSA AGNPLRRAAF  180
YFKEALQSLL TGSTRPASSS FEVIQTIKAY KIFSNISPIP MFSSFTANQA MLEAVDGAML  240
VHVIDFDIGF GSHWASFMKE LADKAESTHT KPPILRVTAL VQEEYAVESR LIRENLAQFA  300
RELNIGLDVD FVLIRTFELL SFKAIKFIDG EKIVVLLSPA IFRRVGSGQF AADLRRVSPH  360
VVVHVDSEGV VGPGPSSFRQ TVIEGLEFYS GLLESLEAAN VGGDWIKKIE NFVLFPKIVE  420
TVGAAGGRGM TWKEAFVAAG FRPVGLSQFA DFQANLLLGK VQIGGFHVAK RHAEMLLCWH  480
DRALVATSAW R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-133GRAS family protein