PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183048.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 373aa MW: 41944.5 Da PI: 7.9061

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	5.9e-12	48	72	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C f++rtG Ck+G +CkF+H++ XP_019183048.1 48 VPDCAFYLRTGACKFGINCKFNHPM 72 689********************95 PP
2	zf-CCCH	33.3	8.5e-11	95	117	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++ G CkyG++C+++H++ XP_019183048.1 95 VCKFYLEAGGCKYGESCRYMHSK 117 5********************95 PP
3	zf-CCCH	27	7.8e-09	135	158	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+f++ +GtC yG+ C F+H+ XP_019183048.1 135 EKECPFYMSNGTCGYGAHCVFHHP 158 689********************8 PP
4	zf-CCCH	24.4	5.2e-08	282	307	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C +f++tG Ck+ + C+F+H+ XP_019183048.1 282 PGQPECAYFMKTGGCKFKSLCRFHHP 307 5789*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MDMRRRGFTS SEEEEEEEET LALAENFASI ALNSGQRSTF GLPLRPNVPD CAFYLRTGAC 60 KFGINCKFNH PMRMPGQVVE ENYRDGSLKK SPQIVCKFYL EAGGCKYGES CRYMHSKGES 120 KLQFNFLGLP IRLGEKECPF YMSNGTCGYG AHCVFHHPNP TPMGGLNTSS TLNDESVGQS 180 HCSFGNLDAG ESLHFSGTSQ LGLTSWPPDA LHMSSDKTLS FPSFSSSHIS SHSERKNYLG 240 PSYLYQRYGL SQSTQVSNAS VKRIESFEHT KAMQSEEFPE RPGQPECAYF MKTGGCKFKS 300 LCRFHHPAQK PDILLNDKGL PLRPVSVSLC SEILKLLTFD IFICYTCMQN SLALFPPTQQ 360 KRKKWREIYW TGH

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MDMRRRGFTS SEEEEEEEET LALAENFASI ALNSGQRSTF GLPLRPNVPD CAFYLRTGAC  60
KFGINCKFNH PMRMPGQVVE ENYRDGSLKK SPQIVCKFYL EAGGCKYGES CRYMHSKGES  120
KLQFNFLGLP IRLGEKECPF YMSNGTCGYG AHCVFHHPNP TPMGGLNTSS TLNDESVGQS  180
HCSFGNLDAG ESLHFSGTSQ LGLTSWPPDA LHMSSDKTLS FPSFSSSHIS SHSERKNYLG  240
PSYLYQRYGL SQSTQVSNAS VKRIESFEHT KAMQSEEFPE RPGQPECAYF MKTGGCKFKS  300
LCRFHHPAQK PDILLNDKGL PLRPVSVSLC SEILKLLTFD IFICYTCMQN SLALFPPTQQ  360
KRKKWREIYW TGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	4e-65	C3H family protein