PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183133.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 346aa MW: 38608.3 Da PI: 7.0349

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183133.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.9	2.7e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l +++q+G+++W++I+++ g+ R++k+c++rw +yl XP_019183133.1 14 RGQWTPEEDHKLSSYIAQHGTRNWRLIPKHAGLQRCGKSCRLRWTNYL 61 89********************************************97 PP
2	Myb_DNA-binding	46	1.2e-14	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++ E++ +v ++ lG++ W+ Ia+ ++ gRt++++k++w++ XP_019183133.1 68 GQFSEAEEQTIVTLHSVLGNR-WSVIAAQLP-GRTDNDVKNHWNT 110 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRIPCCEKE NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY 60 LRPDLKHGQF SEAEEQTIVT LHSVLGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG 120 IDPVTHKPFS HLISEIATTL APPQVPHLAE AALGCFKDEM LHLLTKKRIG FQLHPVGPAA 180 PVKHEDKDET IEKIKYGLSR AIKEPPVDQM LPAAGNINKP WDNHAGATSS NLGETSSGFP 240 TSDHHHDHDH HHHHHHHHGG FQYSLPCLMH EGEDGSPWNQ SMCTGSTCTP GEQQGRLHDK 300 AVEDENGECS EGGKRTTTTD APPPSIFNSD CVLWDISSED LINPMV

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRIPCCEKE NVKRGQWTPE EDHKLSSYIA QHGTRNWRLI PKHAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SEAEEQTIVT LHSVLGNRWS VIAAQLPGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLISEIATTL APPQVPHLAE AALGCFKDEM LHLLTKKRIG FQLHPVGPAA  180
PVKHEDKDET IEKIKYGLSR AIKEPPVDQM LPAAGNINKP WDNHAGATSS NLGETSSGFP  240
TSDHHHDHDH HHHHHHHHGG FQYSLPCLMH EGEDGSPWNQ SMCTGSTCTP GEQQGRLHDK  300
AVEDENGECS EGGKRTTTTD APPPSIFNSD CVLWDISSED LINPMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56110.1	1e-114	MYB family protein