PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183150.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 168aa MW: 19651.2 Da PI: 7.7933

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.4	2.5e-11	14	59	2	45
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT Ed+ + + ++G + +W++Ia+ ++ gRt+k++ +++ XP_019183150.1 14 PNWTRHEDKMFEIGLVRYGEErvdRWAKIAELLP-GRTDKDVEQHYL 59 58****************9*********.********96 PP
2	Myb_DNA-binding	49.1	1.3e-15	99	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eE+++++++ +++G+g+Wk+Iar +R++ q+ s+ qky XP_019183150.1 99 QWTAEEHKRFLEGLNRFGKGDWKSIARQCVRTRSATQVASHAQKY 143 5************************9999***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MEHLASLWMY NSTPNWTRHE DKMFEIGLVR YGEERVDRWA KIAELLPGRT DKDVEQHYLI 60 LLADVADIDA GLIEVPNYLD NPVLSDEKKG KEPRKQAHQW TAEEHKRFLE GLNRFGKGDW 120 KSIARQCVRT RSATQVASHA QKYFIHLEKD AKNRTKKRSS IYDVSLDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	6e-42	MYB family protein