PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183425.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 209aa MW: 23722.5 Da PI: 7.1642

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.5e-18	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ ar g++Rt+k+c++rw++yl XP_019183425.1 18 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 65 79********************************************97 PP
2	Myb_DNA-binding	54.5	2.7e-17	71	114	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ XP_019183425.1 71 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 114 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence
MDKKTCCNSS SYDPEIRKGP WTMEEDLILI NYIANHGEGV WNSLARSAGL KRTGKSCRLR 60 WLNYLRPDVR RGNITPEEQL LIMELHAKWG NRWSKIAKHL PGRTDNEIKN FWRTRIQKHL 120 KQEAATNEST VISGQGSCDK TDQVSSTSAS QLSSIGQGDI YSSPQSSFVC NMEIETGFQG 180 HHFPSHEYSN DAVWGMDDIS WSMQILNGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	1e-81	MYB family protein