PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019183708.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 774aa MW: 87062.3 Da PI: 8.3012

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019183708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.2e-17	104	201	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY +YA+++GFsvr+ + k+ r+g++t+r + C++e + +++ +++rr+r+++r++C+a++ ++k+k + + v+ ++ eH+ XP_019183708.1 104 FYMTYARTCGFSVRQGTLKRG-RDGKVTTRYLLCNRESVKGGGRSTpkpveggsggPSTQRRRRVSNRVNCNAQICITKDKGAGFIVSIFVPEHT 197 9**************9998.8888*******9999888888999*999999****************************** PP FAR1 87 Hela 90 H ++ XP_019183708.1 198 HRMC 201 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence
MESTAPQTTG DYGMPPLQPP LGNPPVVRFA RGTMESTTPE TTGDYGMPPL QLPPGNPPAD 60 WRQESVGTGG YISIPVKYWW PTVDSAITPA VGYRFNTIAE GVHFYMTYAR TCGFSVRQGT 120 LKRGRDGKVT TRYLLCNRES VKGGGRSTPK PVEGGSGGPS TQRRRRVSNR VNCNAQICIT 180 KDKGAGFIVS IFVPEHTHRM CSEPSKLFMR INRKLDVAQQ AFLTNCIKVN VGGSKGFRLY 240 KESVGSFANV GATETEFHNF KRDLQSYVAD KDGEMIIAMF NQKHDVCENF FFDYYLDEGN 300 HVARLFWADH TGRQNFLSFG DVISFDATYG TNRYSLVFIP FTGVDHHKRC ITFAGGLVTR 360 EGTDSYVWVL ERFKTAMGKS PLCVVTDEDP AMKSAIARVL PECRHRYCMW HIMTKVSEKS 420 GAELSKDQNF RNQLNNIVWN ETISIDDFET QWQSLMEKYN LTGHRWRFWI PSYFLDLPMS 480 GVLRTTSRSE AENTCSLVEF YVQFESVLET QRHRQSKLNA ESEGSLPDFK TPLALERHMA 540 QVFTLTVFHE LQVEIEAACF YCSVVGIHAY GECIRYDIRG EYNVAHTVEY TPSLTIATCS 600 CKLFERLGFV CRHMFLVFKD AEMVSLPSRY IAARWCKQEG LASWCARCSD CPPLETVPSQ 660 LWTEIHNCAV IVGSNKVRQT RMLQVIKELR DEFLGDGMDV DPPKGNGVAI AALCGVEPPT 720 SIIIKPPAQA KNKGTGKRIK SQRELAIERS GKASRKCGVC GEYAHHNARS CPLK

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence

MESTAPQTTG DYGMPPLQPP LGNPPVVRFA RGTMESTTPE TTGDYGMPPL QLPPGNPPAD  60
WRQESVGTGG YISIPVKYWW PTVDSAITPA VGYRFNTIAE GVHFYMTYAR TCGFSVRQGT  120
LKRGRDGKVT TRYLLCNRES VKGGGRSTPK PVEGGSGGPS TQRRRRVSNR VNCNAQICIT  180
KDKGAGFIVS IFVPEHTHRM CSEPSKLFMR INRKLDVAQQ AFLTNCIKVN VGGSKGFRLY  240
KESVGSFANV GATETEFHNF KRDLQSYVAD KDGEMIIAMF NQKHDVCENF FFDYYLDEGN  300
HVARLFWADH TGRQNFLSFG DVISFDATYG TNRYSLVFIP FTGVDHHKRC ITFAGGLVTR  360
EGTDSYVWVL ERFKTAMGKS PLCVVTDEDP AMKSAIARVL PECRHRYCMW HIMTKVSEKS  420
GAELSKDQNF RNQLNNIVWN ETISIDDFET QWQSLMEKYN LTGHRWRFWI PSYFLDLPMS  480
GVLRTTSRSE AENTCSLVEF YVQFESVLET QRHRQSKLNA ESEGSLPDFK TPLALERHMA  540
QVFTLTVFHE LQVEIEAACF YCSVVGIHAY GECIRYDIRG EYNVAHTVEY TPSLTIATCS  600
CKLFERLGFV CRHMFLVFKD AEMVSLPSRY IAARWCKQEG LASWCARCSD CPPLETVPSQ  660
LWTEIHNCAV IVGSNKVRQT RMLQVIKELR DEFLGDGMDV DPPKGNGVAI AALCGVEPPT  720
SIIIKPPAQA KNKGTGKRIK SQRELAIERS GKASRKCGVC GEYAHHNARS CPLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-76	FAR1 family protein