PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019183833.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21126.3 Da    PI: 10.6172
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019183833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.87.9e-202070151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +rien+  r+v fs+Rr g++KKA+E+S+ C++e +++++s++gk y++s+
  XP_019183833.1 20 SRIENDAHRSVIFSQRRRGLIKKANEISTWCGVEMLLVLISPSGKAYTFSK 70
                    59***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MSSNNSTKRA GRGRQRIPLS RIENDAHRSV IFSQRRRGLI KKANEISTWC GVEMLLVLIS  60
PSGKAYTFSK PNMDTILKNY FGDNPLAQTN FAEQHLRAQQ EVNMQIQYSR ITDLEMQIQD  120
QMKLNHALRD AKKARPPISD LPLSELQAMK HRIEMLRSYV LQAKMKVHAQ AIISHDDVGP  180
SGTSAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-26M-type_MADS family protein