PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184054.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 720aa MW: 81173.8 Da PI: 7.1166

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.4	2.7e-14	106	181	17	90
FAR1 17 skskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++s ++ r+g ++++ vC+++g++++ ++ t+ +rr+r+++r+gCkak+++k++++g ++v+ +e+ H+H+++ XP_019184054.1 106 QHSIRKIRDGVAVEKHVVCNRQGFKQTVSSVakTTLARRRRVTNRVGCKAKVVIKRKSNGLYVVHYFEERHTHSMC 181 56667789999************987765558899***********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MWCAAADLES FGICDKDNST DVCGEGSGGV CDEGNPTDVG VECNGDDCDE GNVTDFGVVG 60 SGVGCDEDYL TDVGVQDSLC VLEISPGLTK YWCPVCADSL KPIVGQHSIR KIRDGVAVEK 120 HVVCNRQGFK QTVSSVAKTT LARRRRVTNR VGCKAKVVIK RKSNGLYVVH YFEERHTHSM 180 CSITARQFLK VNRSFDAGHQ MFIASCVRAN IGSVRSYRLF KEIVGEYSNV GATGVDFKNF 240 KRDLMAYILN GDAQLFIDTL FKRCELCEAF DFEYDVDEGD QLSRVFWADV VSRKNFALFG 300 DLYKLVFVPF TGIDNHKRSI TFGAGLLTRE DVDSYVWLLE KFKKTMCHDP ICVVTDQDPA 360 LKVAVARVFG TSKHRFCMWH IMCKVGEKVG LILCKDEVFR RKLNDIVWNK SLDSKSFEDA 420 RSCIMEEYGL GDNGWFRYLF ESRTYWASPY FHDEFMSGLV RTTSRSKSQN SFFGTFSNGH 480 SSLVEFLVHF RSAVGAQRHT QAKLNADCES CFPVLKTPLA LEKHAMDVYT ISVFYDVQVE 540 ICAACYSCQV VSLCDCDGHV SYGIKDGAQR AWYVELVLSD YTATCSCKMF ERMGLLCRHI 600 FCVFKDRGVE SIPSRYVVSR WTKGACLKPI FHIDDTIIDQ SSKVENVRIF TNLLWSDIYA 660 CVGLADGNIE RLAQLRRVIC EQRQLFLQEG SEDGSGVCLR GQQWRCVILF KLRTRVAVSS

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MWCAAADLES FGICDKDNST DVCGEGSGGV CDEGNPTDVG VECNGDDCDE GNVTDFGVVG  60
SGVGCDEDYL TDVGVQDSLC VLEISPGLTK YWCPVCADSL KPIVGQHSIR KIRDGVAVEK  120
HVVCNRQGFK QTVSSVAKTT LARRRRVTNR VGCKAKVVIK RKSNGLYVVH YFEERHTHSM  180
CSITARQFLK VNRSFDAGHQ MFIASCVRAN IGSVRSYRLF KEIVGEYSNV GATGVDFKNF  240
KRDLMAYILN GDAQLFIDTL FKRCELCEAF DFEYDVDEGD QLSRVFWADV VSRKNFALFG  300
DLYKLVFVPF TGIDNHKRSI TFGAGLLTRE DVDSYVWLLE KFKKTMCHDP ICVVTDQDPA  360
LKVAVARVFG TSKHRFCMWH IMCKVGEKVG LILCKDEVFR RKLNDIVWNK SLDSKSFEDA  420
RSCIMEEYGL GDNGWFRYLF ESRTYWASPY FHDEFMSGLV RTTSRSKSQN SFFGTFSNGH  480
SSLVEFLVHF RSAVGAQRHT QAKLNADCES CFPVLKTPLA LEKHAMDVYT ISVFYDVQVE  540
ICAACYSCQV VSLCDCDGHV SYGIKDGAQR AWYVELVLSD YTATCSCKMF ERMGLLCRHI  600
FCVFKDRGVE SIPSRYVVSR WTKGACLKPI FHIDDTIIDQ SSKVENVRIF TNLLWSDIYA  660
CVGLADGNIE RLAQLRRVIC EQRQLFLQEG SEDGSGVCLR GQQWRCVILF KLRTRVAVSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-81	FAR1 family protein