PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184148.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 151aa    MW: 17158.2 Da    PI: 8.6086
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-1887121135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+C t +Tp+WR gp g+ tLCnaCG++y++ +l
  XP_019184148.1  87 CSHCETEDTPQWRMGPLGPNTLCNACGVRYKSGRL 121
                     *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MAIENSDADE NSSGLCVPPD SLDDLDFFPN FSDDFISITD LFSSLENETI ISRSVQESRK  60
GKRKTAEGRR RRYSNPNGGC GWKKRKCSHC ETEDTPQWRM GPLGPNTLCN ACGVRYKSGR  120
LVPEYRPVAS PTFDSSKHSN FHRKIMQHRR V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16986RRRRYSNPNGGCGWKKRK
27087RRRRYSNPNGGCGWKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-37GATA family protein