PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184209.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 349aa MW: 37782.1 Da PI: 6.4294

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	95	119	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg XP_019184209.1 95 FKTKLCCKFRA-GVCPYITNCNFAHG 119 69*******.***********8 PP
2	zf-CCCH	17.4	8e-06	172	197	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C F H+ XP_019184209.1 172 YKGRHCKKFYTEEGCPYGDSCAFLHD 197 78888********************7 PP
3	zf-CCCH	43	7.7e-14	232	257	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_019184209.1 232 WKTRICNKWETTGYCPFGSKCHFAHG 257 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MCVYISVFMD FIGEAVAGGN VLSGSDAVEM SGGFDNWGIP GSMDQGVWAT EDDYNAWNPG 60 SSLETPPNKR SRNSQGGDAH VIVPTRSKAI GKMFFKTKLC CKFRAGVCPY ITNCNFAHGI 120 EELRKPPPNW QEIIAAHESE LGGGVVVEPP REEHQIPTMS SPDLRGETQR SYKGRHCKKF 180 YTEEGCPYGD SCAFLHDEQS RARESVAISV TPSAGPGFGN SATVANQKPS NWKTRICNKW 240 ETTGYCPFGS KCHFAHGAEE LHKFGGGLAE GEGKDSAPTP SNINQGGATE NTAAVSTISA 300 PHGDVYHLGS GVPIQRSSCS MRTGERPIQK WKGPDKISKI YGDWIDDIE

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MCVYISVFMD FIGEAVAGGN VLSGSDAVEM SGGFDNWGIP GSMDQGVWAT EDDYNAWNPG  60
SSLETPPNKR SRNSQGGDAH VIVPTRSKAI GKMFFKTKLC CKFRAGVCPY ITNCNFAHGI  120
EELRKPPPNW QEIIAAHESE LGGGVVVEPP REEHQIPTMS SPDLRGETQR SYKGRHCKKF  180
YTEEGCPYGD SCAFLHDEQS RARESVAISV TPSAGPGFGN SATVANQKPS NWKTRICNKW  240
ETTGYCPFGS KCHFAHGAEE LHKFGGGLAE GEGKDSAPTP SNINQGGATE NTAAVSTISA  300
PHGDVYHLGS GVPIQRSSCS MRTGERPIQK WKGPDKISKI YGDWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-119	C3H family protein