PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184210.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 341aa MW: 36838.9 Da PI: 6.4307

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	87	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg XP_019184210.1 87 FKTKLCCKFRA-GVCPYITNCNFAHG 111 69*******.***********8 PP
2	zf-CCCH	17.4	7.8e-06	164	189	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C F H+ XP_019184210.1 164 YKGRHCKKFYTEEGCPYGDSCAFLHD 189 78888********************7 PP
3	zf-CCCH	43	7.4e-14	224	249	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_019184210.1 224 WKTRICNKWETTGYCPFGSKCHFAHG 249 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MDFIGEAVAG GNVLSGSDAV EMSGGFDNWG IPGSMDQGVW ATEDDYNAWN PGSSLETPPN 60 KRSRNSQGGD AHVIVPTRSK AIGKMFFKTK LCCKFRAGVC PYITNCNFAH GIEELRKPPP 120 NWQEIIAAHE SELGGGVVVE PPREEHQIPT MSSPDLRGET QRSYKGRHCK KFYTEEGCPY 180 GDSCAFLHDE QSRARESVAI SVTPSAGPGF GNSATVANQK PSNWKTRICN KWETTGYCPF 240 GSKCHFAHGA EELHKFGGGL AEGEGKDSAP TPSNINQGGA TENTAAVSTI SAPHGDVYHL 300 GSGVPIQRSS CSMRTGERPI QKWKGPDKIS KIYGDWIDDI E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-119	C3H family protein