PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184332.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 415aa MW: 47296.5 Da PI: 6.2705

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.2	2.3e-17	103	190	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn+YA ++GFs rk k+++ + ++ +++ f Csk+g+r ++ ++ ++ +tr gC+a+ + +++g+ vtk ++eHnH l+p XP_019184332.1 103 IYNDYAFRMGFSARKGKQYYVTGTRILKTKMFWCSKSGFRIIPDTP--NKCYSKIVTRSGCNAMCQFDIDSNGNSIVTKHVKEHNHYLCP 190 5******************999999**********99988..88999*********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MNEIVVTNRI DEIDSNSKIV DENSSVIPGK DDIPVAGEWI LLIAFDFPCT NFVDDNGYIP 60 DDFDHSIAVD GTSEHVIVEE SAIPDNEELL GLSVGSIEDA FVIYNDYAFR MGFSARKGKQ 120 YYVTGTRILK TKMFWCSKSG FRIIPDTPNK CYSKIVTRSG CNAMCQFDID SNGNSIVTKH 180 VKEHNHYLCP ASSSYMLRSH RKVSENQLTC LKNMKRTGVP LSDGIRFLKR QSGGSPFVGF 240 TPRNAYNMIS SDSVKHLDGT DSNNLIEIFR RRQMDESDFY FEFELDEDAR LCNFFWRDGQ 300 MNADYDLFGD LVVHDTTYRT NRYDMICAPF VGMNHHCMNL MFGCGFLLNE RIESFVWLFN 360 VFVRSMGGKH PQTIMTDQCA AMAAAIAQVF SNSNHRLCIW HIGENSKKHK KSLRN

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MNEIVVTNRI DEIDSNSKIV DENSSVIPGK DDIPVAGEWI LLIAFDFPCT NFVDDNGYIP  60
DDFDHSIAVD GTSEHVIVEE SAIPDNEELL GLSVGSIEDA FVIYNDYAFR MGFSARKGKQ  120
YYVTGTRILK TKMFWCSKSG FRIIPDTPNK CYSKIVTRSG CNAMCQFDID SNGNSIVTKH  180
VKEHNHYLCP ASSSYMLRSH RKVSENQLTC LKNMKRTGVP LSDGIRFLKR QSGGSPFVGF  240
TPRNAYNMIS SDSVKHLDGT DSNNLIEIFR RRQMDESDFY FEFELDEDAR LCNFFWRDGQ  300
MNADYDLFGD LVVHDTTYRT NRYDMICAPF VGMNHHCMNL MFGCGFLLNE RIESFVWLFN  360
VFVRSMGGKH PQTIMTDQCA AMAAAIAQVF SNSNHRLCIW HIGENSKKHK KSLRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-57	FAR1 family protein