PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184334.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 155aa MW: 17888.4 Da PI: 10.3674

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.5	4.8e-25	1	42	9	50
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rqvt +kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ XP_019184334.1 1 RQVTSCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 42 8****************************************8 PP
2	K-box	101.5	1.2e-33	61	155	4	98
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ s++ea+++ +qqe+akL+++i+++q++++++lGe+L+ L++keL++Le ++ek++ ++RskKnell+++ie +qk+e elq++n++Lr+k+ XP_019184334.1 61 TNTGSVSEANTQFYQQESAKLRRQIREIQTSNKQILGESLGVLNHKELKNLEGKVEKAIGRVRSKKNELLFSEIELMQKREIELQNANMYLRAKV 155 334449**************************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence
RQVTSCKRRN GLLKKAYELS VLCDAEVALI VFSTRGRLYE YANNSVRATI DRYKKHHSDS 60 TNTGSVSEAN TQFYQQESAK LRRQIREIQT SNKQILGESL GVLNHKELKN LEGKVEKAIG 120 RVRSKKNELL FSEIELMQKR EIELQNANMY LRAKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	3e-87	MIKC_MADS family protein