PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184388.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 124aa MW: 14156.2 Da PI: 8.2845

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.2	3.7e-40	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C++dC+l pyfp ++p++f +vh++FGasnv k+l++++e++r d+++sl+yeA++r++dPvyG+vg+i+ l++q+ + + +la XP_019184388.1 8 RCAACKQLRRRCPSDCILLPYFPPTDPQRFSYVHRIFGASNVAKMLQKVEEHHRGDVAESLYYEAHCRIQDPVYGCVGIITILHEQIYNFQCQLA 102 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_019184388.1 103 KVEAE 107 99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence
MSSSSNSRCA ACKQLRRRCP SDCILLPYFP PTDPQRFSYV HRIFGASNVA KMLQKVEEHH 60 RGDVAESLYY EAHCRIQDPV YGCVGIITIL HEQIYNFQCQ LAKVEAEIQA AKAQQQGRLQ 120 PQFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-41	LBD family protein