PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184389.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 128aa    MW: 14671.8 Da    PI: 7.3626
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-398106199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk lrr+C++dC++ pyfp  +p++f  vh++FGasnv k+l++++e+er d++ sl+yeA++r++dPvyG+vg+i+ l++q+   + +l+
  XP_019184389.1   8 RCAACKQLRRRCPSDCIFLPYFPPIDPQRFSSVHRIFGASNVAKMLQKVEEHERGDVAVSLYYEAHCRIQDPVYGCVGIITFLHEQIYDFQCQLS 102
                     6*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_019184389.1 103 KVEA 106
                     9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    
MSSSSNNRCA ACKQLRRRCP SDCIFLPYFP PIDPQRFSSV HRIFGASNVA KMLQKVEEHE  60
RGDVAVSLYY EAHCRIQDPV YGCVGIITFL HEQIYDFQCQ LSKVEADIQA VKSQQLGHLQ  120
LQFPENFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-44LBD family protein