PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019184503.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 422aa MW: 48456.5 Da PI: 7.3689

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019184503.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.1	3.3e-19	48	134	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+Y +vGFsvr+ k+++s+ +++++++ f Csk g+++++ k ++ rtgC a ++ ++++g w v+k e+ HnHel+p XP_019184503.1 48 DMYNDYDFRVGFSVRRGKQRYSSATKTMKTKMFHCSKDGFKRSTGKG----CYSKIDGRTGCGAYVQFDLHENGMWIVSKHEKLHNHELVP 134 58**************************************99887....88999*******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MYDSIAQQDV AETEHTTDPV GVVDTEDANP ADQDLVGMSV CSVDESYDMY NDYDFRVGFS 60 VRRGKQRYSS ATKTMKTKMF HCSKDGFKRS TGKGCYSKID GRTGCGAYVQ FDLHENGMWI 120 VSKHEKLHNH ELVPPSKSYL LRSHKMVSRN HISYLTDLKS SGVSVADGVR FLKTQSGGSP 180 LVGFTSRDAY NSLCTDALNR LHGTDSNTLI EIFKRRQSSE RDFYFDFEVD LESSPQSIMT 240 DQCAAMAAAI VQVFPSSRHR LCIWHIGENS KKHIKGLRNQ KDFLDIFNCL LKYTDTEAEF 300 EFYWTRMVTT YKCHNNHWIE KLYGCREKWF PAFNKDYFSG GILSSQRSET TNHSISRRLS 360 KTSGLCDFYN SFVGVISEWR SRENGEDVRC SQGVPTMVMD NVKILLHARK IYTIEIYYLF 420 EE

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MYDSIAQQDV AETEHTTDPV GVVDTEDANP ADQDLVGMSV CSVDESYDMY NDYDFRVGFS  60
VRRGKQRYSS ATKTMKTKMF HCSKDGFKRS TGKGCYSKID GRTGCGAYVQ FDLHENGMWI  120
VSKHEKLHNH ELVPPSKSYL LRSHKMVSRN HISYLTDLKS SGVSVADGVR FLKTQSGGSP  180
LVGFTSRDAY NSLCTDALNR LHGTDSNTLI EIFKRRQSSE RDFYFDFEVD LESSPQSIMT  240
DQCAAMAAAI VQVFPSSRHR LCIWHIGENS KKHIKGLRNQ KDFLDIFNCL LKYTDTEAEF  300
EFYWTRMVTT YKCHNNHWIE KLYGCREKWF PAFNKDYFSG GILSSQRSET TNHSISRRLS  360
KTSGLCDFYN SFVGVISEWR SRENGEDVRC SQGVPTMVMD NVKILLHARK IYTIEIYYLF  420
EE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	2e-23	FAR1 family protein