PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184918.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 287aa    MW: 31280.3 Da    PI: 6.8821
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-143882147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
   XP_019184918.1 38 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 82
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MTSASSNSQS MANPSNSSTP TDGSGKKVRK PYTITKSRES WTEEEHDKFL EALQLFDRDW  60
KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG TIAHVPPPRP KRKASHPYPQ KAPKNVLVPL  120
PGSMAYPSSV NPLAPGYPSW DETSMLINAS TSGIMPPEDE FNVHGVEADV GSKGAARICN  180
SDVGEIGNSS LPNQSKLGSV LHGLPDFAEV YGFIGSVFDP DTSCHELKLK EMDPINLETV  240
LLLMRNLSIN LSSPDFEPIR KMLSSYDGST RTAGVTTGSA NLNDVLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-121MYB_related family protein