PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019184925.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 278aa    MW: 30438.5 Da    PI: 6.8821
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019184925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-142973147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
   XP_019184925.1 29 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 73
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MANPIINSST PTDGSGKKVR KPYTITKSRE SWTEEEHDKF LEALQLFDRD WKKIEDFVGS  60
KTVIQIRSHA QKYFLKVQKN GTIAHVPPPR PKRKASHPYP QKAPKNVLVP LPGSMAYPSS  120
VNPLAPGYPS WDETSMLINA STSGIMPPED EFNVHGVEAD VGSKGAARIC NSDVGEIGNS  180
SLPNQSKLGS VLHGLPDFAE VYGFIGSVFD PDTSCHELKL KEMDPINLET VLLLMRNLSI  240
NLSSPDFEPI RKMLSSYDGS TRTAGVTTGS ANLNDVLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-120MYB_related family protein