PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185048.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22448.8 Da    PI: 10.1706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.62.4e-212169249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                    rien+ +r+v+fskRr g++KKA+E+S+LC++e++v++f  ++ k+y++
  XP_019185048.1 21 RIENDVQRNVSFSKRRFGLFKKASEISTLCGVEILVVVFPlNQAKVYTF 69
                    9**************************************8345689998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MSSNNSTRRV SRGRQRIPLQ RIENDVQRNV SFSKRRFGLF KKASEISTLC GVEILVVVFP  60
LNQAKVYTFG SLSVPSVLRK YIAESENRTI EANDAEELLR SQEEANIRNM NHQINVLEAQ  120
IQHEMNVNKA LTEAAKGMPS ISNLPLAELL PMKQKMEILR SKVLQMLNQP IMPIQTQAMP  180
TMTTTQSDND VHPSGATPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-20M-type_MADS family protein