PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185054.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22724.1 Da    PI: 10.351
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.37.4e-222069149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyey 49
                    +rien+ +r+v+fskRr g++KKA+E+S+LC+++++v++f +++ k+y++
  XP_019185054.1 20 ERIENDVQRNVSFSKRRFGLFKKANEISTLCGVKILVVVFPPNQeKVYTF 69
                    69**************************************9876379999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MSSNNRTRRL GRGRRRIPLE RIENDVQRNV SFSKRRFGLF KKANEISTLC GVKILVVVFP  60
PNQEKVYTFG SPSVPEVLNK YVAERENRTI ETNDTEEFLR SQEEANIRNM NHRINLLEEQ  120
IQHEMNVSKA LTEAAKGMPS ISNLPLAELL PLKQKMETLL STVRQMLNQR TMPVQTPAMP  180
VMTTTQSDND VLPSGATPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-16M-type_MADS family protein