PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185057.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22442.8 Da    PI: 9.5265
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.2e-222069149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyey 49
                    krien+++r+v+fskRr g++KKA+E+S+LC+++++v++f +++ k+y++
  XP_019185057.1 20 KRIENDIQRKVSFSKRRLGLFKKASEISTLCGVKISVVVFPPNQeKVYTF 69
                    79**************************************9876379999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MSSNNSVRRV GKGRQRIPLK RIENDIQRKV SFSKRRLGLF KKASEISTLC GVKISVVVFP  60
PNQEKVYTFG SPSVPDVLNK YVAESENRTI EANDTEELLR SQQEENIKNM NLQINLLEEQ  120
IQHEMNVSKA LTEAAKGMPS ISNIPLAELP SMKEKMEILR SKVLQMLNRP IMPIQTQAMP  180
VITTTQSDND VDPSGETSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-23M-type_MADS family protein