PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185163.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 270aa MW: 30309.9 Da PI: 5.914

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185163.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68	1.2e-21	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ XP_019185163.1 88 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 148 89***************99************************************97 PP
2	Wus_type_Homeobox	101.6	5.7e-33	88	150	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq XP_019185163.1 88 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 150 89***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MEWEKQLAPP PPPPQQAEEL GGGMFVKVMT DEQMEVLRKQ IAVYATICEQ LVDLHKSIAS 60 QHDLAGARLG NLYCDPLVTS AGHKITGRQR WTPTPVQLQI LERIFDQGNG TPSKQKIKEI 120 TSELSQHGQI SETNVYNWFQ NRRARSKRKQ QVTATNNVES EVETEVDESP NDKKTKPEDF 180 QSSHIATSRA EDVCYQNPLV SSPMHSIDPR SSKAEPMFPS ESTSKPAGNF AQMSFYGLSN 240 PRMDHQMIGK VEVPGSYNPY LNAEDYNMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	9e-83	WOX family protein