PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185164.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26735.3 Da    PI: 8.0752
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF823.8e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr g++KKAeELSvLCda+va+i+fss+ kl+ ys+
  XP_019185164.1 10 KIDNVTARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSSAKLFHYSN 59
                    69**********************************************85 PP
2K-box46.51.6e-16951732099
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +++  k+  e+ qr  R++ Ge+L++Ls++eLqqLe+ L+ +l ++ +kK e ++++i++lq+k   l een++Lr+++ 
  XP_019185164.1  95 HSRSSKEIAEKTQRL-RQMRGEELQELSIEELQQLERSLQIGLDHVINKKGEKIMKEINQLQEKGVHLMEENERLRQQVV 173
                     445555556666665.*************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MARDKIQIRK IDNVTARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS SAKLFHYSNS  60
SMREILEKRN LHSKNLQKMG LQPSVELQLV ENSNHSRSSK EIAEKTQRLR QMRGEELQEL  120
SIEELQQLER SLQIGLDHVI NKKGEKIMKE INQLQEKGVH LMEENERLRQ QVVETSKGQR  180
SMAVAPRDSE NLLNEEGGLS SESVTNACKY PGTPQDYYED CSDTSLKLGL PYTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-86MIKC_MADS family protein