PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185259.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 320aa    MW: 34549.6 Da    PI: 5.2252
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.72.6e-20151237290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Yn+YA++vGFsvrk +++ +  ++++ ++ f+Csk g++ + +     +  ++  tr gC a+++    +dg w vtk ++ HnHel+
  XP_019185259.1 151 LYNNYAYRVGFSVRKGNQRCKVYSKTVQMKMFMCSKAGFKVKANAG--VRAYSKIDTRSGCGACVQFDVGEDGLWTVTKHVKVHNHELC 237
                     7***************************************998877..888899**********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MIEEMKGNSH YYQQRGAGTS MLLFTVVFTI FVMLSANVEP AESVMSSAAA NLNATTASKC  60
GGGGTVAGAG PADGEEFLMD SESSIDQRDE ALDQRDEAGD ELHTVPVSED VVVDSPSSDP  120
IELDIDGSSS NPVDEDLVGV VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK  180
MFMCSKAGFK VKANAGVRAY SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD  240
KSHLLRSHRN VGDNQLLYLK DLKKSGVAMA DGIRFLKHQA GGSPLVGFTN RDAYNSIASD  300
TSKRLDGTDS NSLIEIFRKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-18FAR1 family protein