PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185301.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 236aa MW: 26604.9 Da PI: 7.0264

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	45	92	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + + erE++ Rd++N f+eL +l ++ ++ Ka iL+++++ +++ XP_019185301.1 45 KIHKAEREKQKRDNMNVLFAELANVLDPS----HQNYGKACILKETMRLVRE 92 667889******************99887....6788888888888777666 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MASEASTPVN DCAVHVFSSS RKRKHDKAPR NHEAEREPSN KVPRKIHKAE REKQKRDNMN 60 VLFAELANVL DPSHQNYGKA CILKETMRLV RELIVQVDNL RKENVALNSE SHYMIVEKDE 120 LKEEKIALEV QIENLLTKIN ETIRSQTTNI TSPPQLTEDH LRTSIHDYAS SSAAATGPVL 180 VVPLHNDLQM YSTADNPEAL QNLPPSVSRP RPRYPSPSDS WPSRVLNVAS STTEDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.2	4e-25	bHLH family protein