PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185307.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 326aa MW: 36695.4 Da PI: 6.5986

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.8	2.2e-14	124	175	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h e+Er+RR+++N+ ++ Lr+++P++ ++++ + a+i+ A++++k+L+ XP_019185307.1 124 QRMTHIEVERNRRRQMNDYLAVLRSMMPPS---YAQRGDQASIVGGAINFVKELE 175 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MALEAVVFQQ DPFSYGYCRD FHGMEGWDCY GGFGFEEDDE RKLNCETFTE QVGSNGGYYY 60 WDSSPPVSVA NTSSPEVCAA AAGNGLLSSV EYPAAMDPQA AAPLTRRKRR RTKCSKNKEE 120 IENQRMTHIE VERNRRRQMN DYLAVLRSMM PPSYAQRGDQ ASIVGGAINF VKELEQLSQF 180 LEAHKLVKNL PYYNAKKTST SSSSSLPFSN FFHFPQYSTS ATRNHAASDK AAAEKCSAVA 240 DIEVAMVDDH ANVKVLSRKR PKQLLKMITW FHAMSLTILH LNATTIDQMV LYSFSLKVEE 300 ECRLSTVKEI ASSVHEMVAM IEQENQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	111	RKRRR
2	107	112	RKRRRT
3	125	136	RMTHIEVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-78	bHLH family protein