PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185308.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 365aa MW: 39928.6 Da PI: 6.3432

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.3e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++++ G g+W++ +++ g++R++k+c++rw +yl XP_019185308.1 15 KGPWTPEEDQKLINYINKNGHGSWRALPKHAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	56.2	7.7e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l XP_019185308.1 68 RGKFSQEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MGRSPCCDEN TGLKKGPWTP EEDQKLINYI NKNGHGSWRA LPKHAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSQEEEQTIL NLHAILGNKW SAIATHLPGR TDNEIKNFWN THLKKKLIQM 120 GYDPMTHRPR TDIFSSLPHL IALANLKELV DQHQSSWEEQ AAMARLQSEM AKFQYLQYLL 180 QTSPAPAPPP PPPGPGFSPN NLNNTATANN NNNSNNNVSD MEAYSHLLST VLGSSSATTQ 240 MDSSVLTLSN LGQAIQDSSI PFSHLPDLQP PCAAIFQQSS KDNNNNNNNM VQAQGISGFT 300 VLSDGENSPT SPWLPSSLSP SPPPPPVVPE PPTVDGSGAS SYGGAPPSSV WPDLLLDDDP 360 LFPDL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MGRSPCCDEN TGLKKGPWTP EEDQKLINYI NKNGHGSWRA LPKHAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSQEEEQTIL NLHAILGNKW SAIATHLPGR TDNEIKNFWN THLKKKLIQM  120
GYDPMTHRPR TDIFSSLPHL IALANLKELV DQHQSSWEEQ AAMARLQSEM AKFQYLQYLL  180
QTSPAPAPPP PPPGPGFSPN NLNNTATANN NNNSNNNVSD MEAYSHLLST VLGSSSATTQ  240
MDSSVLTLSN LGQAIQDSSI PFSHLPDLQP PCAAIFQQSS KDNNNNNNNM VQAQGISGFT  300
VLSDGENSPT SPWLPSSLSP SPPPPPVVPE PPTVDGSGAS SYGGAPPSSV WPDLLLDDDP  360
LFPDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	2e-99	MYB family protein