PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185327.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 403aa MW: 43966.5 Da PI: 10.1256

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.5	2.6e-16	57	141	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + +++ + s++p++++l+ XP_019185327.1 57 EWSEGAVSSLLEAYEAKWVLRNRAKLKGQDWEDVARHVsargNTTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYSRLD 141 5***********************************53333333456778**************99984.....57**9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MRGGMDTLQE PANNNNISKE NPSLLSNGGP NPKQESPRSL ATAATVVAAS DRLKRDEWSE 60 GAVSSLLEAY EAKWVLRNRA KLKGQDWEDV ARHVSARGNT TKSPKTQTQC KNKIESMKKR 120 YRSESATAAD ASSWPLYSRL DLLLRGNAPS HQPQPQPQPP LLPPPPPPPP PPQQHLPPPP 180 PPPPQPASRV ANAPFMMAPE PPLLTPPPPP PAPPPSLVVP LANAGHHSHG SDGYIRGAKE 240 DVMQEKLSEN MASEKNMATD TDSISTPALY RNEKEEAAKE AAAANKLRSS TERMKNKRRK 300 RSGGGGGFGG GRDRNWEVAE SIRLLAEVVA RTEEARTEAM REVERMRAEA ELKRGEMELK 360 RTEIIANTQL EIAKLFASCL ASNNNNTNNN NKGVDPSLRI GRS

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MRGGMDTLQE PANNNNISKE NPSLLSNGGP NPKQESPRSL ATAATVVAAS DRLKRDEWSE  60
GAVSSLLEAY EAKWVLRNRA KLKGQDWEDV ARHVSARGNT TKSPKTQTQC KNKIESMKKR  120
YRSESATAAD ASSWPLYSRL DLLLRGNAPS HQPQPQPQPP LLPPPPPPPP PPQQHLPPPP  180
PPPPQPASRV ANAPFMMAPE PPLLTPPPPP PAPPPSLVVP LANAGHHSHG SDGYIRGAKE  240
DVMQEKLSEN MASEKNMATD TDSISTPALY RNEKEEAAKE AAAANKLRSS TERMKNKRRK  300
RSGGGGGFGG GRDRNWEVAE SIRLLAEVVA RTEEARTEAM REVERMRAEA ELKRGEMELK  360
RTEIIANTQL EIAKLFASCL ASNNNNTNNN NKGVDPSLRI GRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	2e-54	Trihelix family protein