PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185404.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 260aa    MW: 29613.7 Da    PI: 9.7472
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-0595117223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  Hi+  H
  XP_019185404.1  95 SCSVCSRVYPTSRLLSIHISEaH 117
                     6******************9888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MAMELERAVR LEFPFWSPAR RRYGPDDPFF AAGNIERQLL AKQVALDLTE AEKQVVRNMD  60
YGESSDVFCP IIGCCAWLRS LDDFEDHYNA RHSASCSVCS RVYPTSRLLS IHISEAHDSF  120
FKAKVARGFA MYECLVEGCG AKLNSYKIRL QHLVDKHKFP ASYEFFRKAH PSKKRRQKNQ  180
LRQASFKTEQ DSNAMQVEDM DKLVSAVSKL STSDSPSTIS FGRNRNRGLA FMPRAVQCER  240
RPRPDSSQSS SVGGALNRRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178KKRRQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-106C2H2 family protein