PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185446.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 417aa MW: 47368.1 Da PI: 7.8682

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185446.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.1	6.1e-15	109	168	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_019185446.1 109 SRFRGVSRHRWTGRYEAHLWDkLSWNAtqkKKgKQVYLGAYDEEEAAARAYDLAAVKYWG 168 789****************888888876447**********************998 PP
2	AP2	52.9	9.4e-17	211	262	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_019185446.1 211 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 262 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MVLTFSEAKI KLKNAAAENI YIYIIEVEMY AMAAKEMKSE GAERCGRRRP IRGEVEDEAA 60 NPGGDRRIKR RRRDAESCEI QTQKQQDLAV ETTRTTTTLA GPPTVKRSSR FRGVSRHRWT 120 GRYEAHLWDK LSWNATQKKK GKQVYLGAYD EEEAAARAYD LAAVKYWGTS TCTNFPISEY 180 EKEIEFMQTV TKEEYLATLR RKSSGFSRGA SKYRGVARHH HNGRWEARIG RVFGNKYLYL 240 GTYSTQEEAA RAYDIAAIEY RGMNAVTNFD LSTYIRWLKP GVNSPLLDIS QESKPNAVPE 300 ALLASNFHST MAVNISQTEP YRADDNEQVF EAKLPINGCR KSSSPTALSL LLRSSIFREL 360 LEKNSNISDE EEDDRKTVYG NQQNDLVCNG DEYGTTADIY DATADEIPFL LSVPFQL

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MVLTFSEAKI KLKNAAAENI YIYIIEVEMY AMAAKEMKSE GAERCGRRRP IRGEVEDEAA  60
NPGGDRRIKR RRRDAESCEI QTQKQQDLAV ETTRTTTTLA GPPTVKRSSR FRGVSRHRWT  120
GRYEAHLWDK LSWNATQKKK GKQVYLGAYD EEEAAARAYD LAAVKYWGTS TCTNFPISEY  180
EKEIEFMQTV TKEEYLATLR RKSSGFSRGA SKYRGVARHH HNGRWEARIG RVFGNKYLYL  240
GTYSTQEEAA RAYDIAAIEY RGMNAVTNFD LSTYIRWLKP GVNSPLLDIS QESKPNAVPE  300
ALLASNFHST MAVNISQTEP YRADDNEQVF EAKLPINGCR KSSSPTALSL LLRSSIFREL  360
LEKNSNISDE EEDDRKTVYG NQQNDLVCNG DEYGTTADIY DATADEIPFL LSVPFQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	74	RRIKRRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-81	AP2 family protein