PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185625.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 319aa    MW: 35625.7 Da    PI: 4.5142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  +   G  +W+++++  g+ R++k+c++rw +yl
   XP_019185625.1 14 KGPWTAEEDKKLITFILNNGQCCWRAVPKLAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.25.8e-1674111847
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
   XP_019185625.1  74 EEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      999************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MGRQPCCDKV GLKKGPWTAE EDKKLITFIL NNGQCCWRAV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGLL SDFEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
FDPVTHKPLS ATDDDDDQKT NKTKSQTENG TSADQESPVP GTSNDQSMEE DNKSMETSTQ  180
SPVFESSIME VSNGFCTDEV PLIEPHEILV PVSSTPTCSS SDSDNYTAGG GGDFVSSNNV  240
NNNVNGVLED MEMFLPSLDW QCDSIGDMGF WGDDFITTTL DSLFNSDSNN NIIINNNNNL  300
NQVPLMVSDE ESWKLDQLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-94MYB family protein