PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185726.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28295.9 Da    PI: 7.626
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185726.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss
  XP_019185726.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFSS 59
                    79***********************************************96 PP
2K-box942.5e-31771743100
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     + + ++ ++ +++s+++e+ kLk ++e+Lqr qRhllGedL++L++ e+++Le+qL++slk+iRs++++++l+q+++lq kek   e+nk+L++k
  XP_019185726.1  77 TLEVNRPNKDNEQSSYKEYLKLKGKYESLQRYQRHLLGEDLGPLNIDEIEHLEHQLDTSLKHIRSTRTQMVLDQLSDLQTKEKLWLEANKTLESK 171
                     566677788999*********************************************************************************** PP

           K-box  98 lee 100
                     lee
  XP_019185726.1 172 LEE 174
                     987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFSST  60
SNMLKTLERY QKCSYGTLEV NRPNKDNEQS SYKEYLKLKG KYESLQRYQR HLLGEDLGPL  120
NIDEIEHLEH QLDTSLKHIR STRTQMVLDQ LSDLQTKEKL WLEANKTLES KLEEFYVDNN  180
LQQPWGPGEQ SGAYSQQHAD QTHGFFQPLE CDSTLHIGFN PVATSSQITA ATNAQNVNAV  240
LPGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.19e-90MIKC_MADS family protein