PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185729.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27480.2 Da    PI: 9.8378
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185729.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  XP_019185729.1  9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTQGKLFEYST 59
                    79***********************************************96 PP
2K-box996.9e-3376173299
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     ++++ + ++++++++++ ++ kL ++ie Lqr+ R++lG+dLe+Lsl+eLq+LeqqL+++lk+iR++Kn+l++e+i+elqkke++lq +n+ L k
  XP_019185729.1  76 AEQRLTTNDSEQQQNWSCQYPKLVSRIELLQRSTRNFLGDDLEPLSLRELQSLEQQLDTGLKRIRTRKNQLMHESISELQKKERALQVQNNILAK 170
                     566777788999*********************************************************************************** PP

           K-box  97 kle 99 
                     ++e
  XP_019185729.1 171 QVE 173
                     997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MGRGRVELKR IENKISRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST QGKLFEYSTD  60
SSMENILERY ERYSYAEQRL TTNDSEQQQN WSCQYPKLVS RIELLQRSTR NFLGDDLEPL  120
SLRELQSLEQ QLDTGLKRIR TRKNQLMHES ISELQKKERA LQVQNNILAK QVEQQKLVQN  180
SASTSMPPHP LVSPLPLPNL TIGIARATEA AKNSENRGQA PPCSTSLVPP WMLRHPNNND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.14e-78MIKC_MADS family protein