PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185785.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 334aa MW: 37597.2 Da PI: 6.0492

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.2e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl XP_019185785.1 15 RGPWTPEEDAKILAYVASHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 62 89********************************************97 PP
2	Myb_DNA-binding	51.1	3.1e-16	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T+eE+ +++++k G++ W++Ia++++ gRt++++k++w++ XP_019185785.1 69 DNFTPEEEACILELHKTIGSR-WSLIAKHLP-GRTDNDVKNYWNT 111 68*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MMGRPPCCDK ANVKRGPWTP EEDAKILAYV ASHGIGNWTL VPQKAGLNRC GKSCRLRWTN 60 YLRPDLKHDN FTPEEEACIL ELHKTIGSRW SLIAKHLPGR TDNDVKNYWN TKLKKKLKNM 120 GIDPLTHKPF SQVFAEFGKL SGLPSPSNQN ALLKNTIKNE ALFEPEPRSF PTNSRFVSAE 180 MNQHLQIQNS PLVHNFPREP IQPPHSFTSS QYCSSSYEQP LSQFLTSSSS TPWNEFILQD 240 PCPMADTELP RQDSKFPGTF SSDDPMTPSV QGEAGPICGF TNEGMNEDIT EGLTDKSHGE 300 ASSSMAEDSF VENILARDRQ MQLEYPQLLD GYFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	9e-84	MYB family protein