PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019185796.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 309aa    MW: 34117.8 Da    PI: 4.3951
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019185796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.5e-1955108356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  XP_019185796.1  55 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 108
                     456899***********************************************9 PP
2HD-ZIP_I/II1309.4e-4254145192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + e+L++++e+L +e+ 
  XP_019185796.1  54 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTNYDSLKLKFEALQHDNESLLKEIG 145
                     69*************************************************************************************99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MKRSLGSSDS LGALMSICPT TADEPGHVYS REFQTMLEGF EEEESGGGAM TMMEKKRRLS  60
VEQVKALEKN FEVENKLEPE RKVKLAQELG LQPRQVAVWF QNRRARWKTK QLERDYGVLK  120
TNYDSLKLKF EALQHDNESL LKEIGELKAK LDGENGESKV TVKEEAVESE SDEEAKQDET  180
AELNLEDFHG GGGLVTASLF ADFKDGSSDS DSSAILNEDN SPKAGAAANA AGGAIFMISN  240
AASFSSPPSI NCYQFSENPK AAAAYQPQMV KIEEHNFFGG EDSCSSLFSD EQAPILHWYS  300
PEVDWNCTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15584KKRRLSVEQVKALEKNFEVENKLEPERKVK
2103111RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-62HD-ZIP family protein