PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185854.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 312aa MW: 35436.1 Da PI: 4.6583

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.8	1.6e-17	41	89	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r +h+e E+rRR++iN++f++Lr+++P++ ++K +Ka+ L +++eYI+ L XP_019185854.1 41 RSKHSETEQRRRSKINERFQTLRDIIPEN----DQKRDKASFLLEVIEYIQFL 89 899***********************9....9***************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MVRTVKSHHE GDEDDDMEFS SRTLDVKMEG RHSDPKANTL RSKHSETEQR RRSKINERFQ 60 TLRDIIPEND QKRDKASFLL EVIEYIQFLK EKIQIYEGPY QGWSPEPSKL MPWRRASGPV 120 EIFTEQSQLI RNGSAHEDNI VVNSMLLANA HDSVESDLNG AAVYKTMDES HTVINEAIPF 180 NIPLQPSLFD GVSVQPSHGS SSYTDQLASQ AQLFDWADKQ EETQSDVPIF DQNDQEELKT 240 ECGEDSLSIE YSQRVLNTLN QTLVSMGVDM SQASVSVELD IGKRTSSETS ISALGGCETY 300 DHAHKKLRRE QR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	1e-52	bHLH family protein