PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019185885.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

E2F/DP

Protein Properties

Length: 371aa MW: 41618.4 Da PI: 8.9834

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019185885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.6	4.4e-23	21	86	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL++l+++fl+l+ + + + + l+++a++L v +rRRiYDi+N+Le+++l+++++kn+++wkg XP_019185885.1 21 RKEKSLGVLCSNFLRLYDRDDVDCIGLDHAADQL---GV--ERRRIYDIVNILESVGLLSRRAKNQYTWKG 86 79**************9999********.....****************************98 PP
2	E2F_TDP	73.6	2e-23	142	222	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL lltq+f+kl+ +s+ + ++l+++a++L+ + +++k+RR+YDi+NV+ ++nliek + k+++rw+g XP_019185885.1 142 RKEKSLALLTQNFIKLFLCSDVEFISLENAASALLGNmhdptAMRTKVRRLYDIANVFASMNLIEKirhpeSGKPAFRWIG 222 79******************************999*****************************99*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MSSSSVHSDS QSKNPTGSYS RKEKSLGVLC SNFLRLYDRD DVDCIGLDHA ADQLGVERRR 60 IYDIVNILES VGLLSRRAKN QYTWKGFAAI PRTLDALKEE GLREKLSGQN IANVSRENEY 120 RQPSNSSTKQ DNTHELLKGD NRKEKSLALL TQNFIKLFLC SDVEFISLEN AASALLGNMH 180 DPTAMRTKVR RLYDIANVFA SMNLIEKIRH PESGKPAFRW IGQVGNPGNG YGSAAANVTD 240 LKRTFGADIT NTVPKRYKAG SSSDWKPSEH ATQYAKHGNL KDENSKVSPD RHKHGSKDFE 300 FGPFSPSSVP REVLGNINVG QIPNWENLAS TYRPRYCNKA LSDLFGHYVE AWNSWYVAAD 360 ADEKQHDQHL P

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MSSSSVHSDS QSKNPTGSYS RKEKSLGVLC SNFLRLYDRD DVDCIGLDHA ADQLGVERRR  60
IYDIVNILES VGLLSRRAKN QYTWKGFAAI PRTLDALKEE GLREKLSGQN IANVSRENEY  120
RQPSNSSTKQ DNTHELLKGD NRKEKSLALL TQNFIKLFLC SDVEFISLEN AASALLGNMH  180
DPTAMRTKVR RLYDIANVFA SMNLIEKIRH PESGKPAFRW IGQVGNPGNG YGSAAANVTD  240
LKRTFGADIT NTVPKRYKAG SSSDWKPSEH ATQYAKHGNL KDENSKVSPD RHKHGSKDFE  300
FGPFSPSSVP REVLGNINVG QIPNWENLAS TYRPRYCNKA LSDLFGHYVE AWNSWYVAAD  360
ADEKQHDQHL P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01330.1	1e-112	E2F/DP family protein